HL_6T7T_061

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6T7T|1|C1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_061 not in the Motif Atlas

Geometric match to HL_7A0S_052

Geometric discrepancy: 0.1196

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6T7T|1|C1|C|2616
6T7T|1|C1|U|2617
6T7T|1|C1|G|2618
6T7T|1|C1|G|2619
6T7T|1|C1|G|2620
6T7T|1|C1|G|2621
6T7T|1|C1|C|2622
6T7T|1|C1|G|2623
6T7T|1|C1|G|2624

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain LI

60S ribosomal protein L10

Chain Lb

60S ribosomal protein L29