HL_6T7T_063

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_063 not in the Motif Atlas

Geometric match to HL_5TBW_056

Geometric discrepancy: 0.1662

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6T7T|1|C1|A|2673
6T7T|1|C1|A|2674
6T7T|1|C1|C|2675
6T7T|1|C1|A|2676
6T7T|1|C1|G|2677
6T7T|1|C1|A|2678
6T7T|1|C1|A|2679
6T7T|1|C1|A|2680
6T7T|1|C1|U|2681

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11-B