3D structure

PDB id
6T7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAAAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T7T_064 not in the Motif Atlas
Geometric match to HL_5TBW_057
Geometric discrepancy: 0.1131
The information below is about HL_5TBW_057
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

6T7T|1|C1|C|2693
6T7T|1|C1|A|2694
6T7T|1|C1|A|2695
6T7T|1|C1|A|2696
6T7T|1|C1|A|2697
6T7T|1|C1|G|2698
6T7T|1|C1|G|2699
6T7T|1|C1|G|2700

Current chains

Chain C1
25S rRNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain LI
60S ribosomal protein L10
Chain LT
60S ribosomal protein L21-A
Chain Lo
60S ribosomal protein L42-A

Coloring options:


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