HL_6T7T_071

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_071 not in the Motif Atlas

Geometric match to HL_5TBW_064

Geometric discrepancy: 0.0758

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7T|1|C1|C|2963
6T7T|1|C1|G|2964
6T7T|1|C1|U|2965
6T7T|1|C1|G|2966
6T7T|1|C1|A|2967
6T7T|1|C1|G|2968

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L2-A