HL_6T7T_094

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

6T7T|1|C2|C|709, 6T7T|1|C2|U|711, 6T7T|1|C2|G|714, 6T7T|1|C2|C|726

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_094 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3391

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6T7T|1|C2|G|703
6T7T|1|C2|C|704
6T7T|1|C2|U|705
6T7T|1|C2|A|706
6T7T|1|C2|A|707
6T7T|1|C2|C|708
6T7T|1|C2|C|709
6T7T|1|C2|U|710
6T7T|1|C2|U|711
6T7T|1|C2|G|712
6T7T|1|C2|A|713
6T7T|1|C2|G|714
6T7T|1|C2|C|726
6T7T|1|C2|U|727
6T7T|1|C2|U|728
6T7T|1|C2|G|729
6T7T|1|C2|G|730
6T7T|1|C2|C|731
6T7T|1|C2|G|732
6T7T|1|C2|A|733
6T7T|1|C2|A|734
6T7T|1|C2|C|735

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A