HL_6T7T_101

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

6T7T|1|C2|U|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_101 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.3913

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6T7T|1|C2|U|1055
6T7T|1|C2|U|1056
6T7T|1|C2|U|1057
6T7T|1|C2|U|1058
6T7T|1|C2|U|1059
6T7T|1|C2|U|1060
6T7T|1|C2|A|1061
6T7T|1|C2|A|1062
6T7T|1|C2|U|1063
6T7T|1|C2|G|1064

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain Sb

40S ribosomal protein S27-A