HL_6T7T_108

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_108 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2067

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6T7T|1|C2|C|1359
6T7T|1|C2|A|1360
6T7T|1|C2|U|1361
6T7T|1|C2|U|1362
6T7T|1|C2|U|1363
6T7T|1|C2|G|1364

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SF

Rps5p

Chain SQ

40S ribosomal protein S16-A

Chain ST

40S ribosomal protein S19-A