HL_6T7T_113

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUCGGGGCAACUCCAU*C

Length

18 nucleotides

Bulged bases

6T7T|1|C2|G|1696, 6T7T|1|C2|G|1697, 6T7T|1|C2|G|1698, 6T7T|1|C2|G|1699, 6T7T|1|C2|C|1700, 6T7T|1|C2|A|1701, 6T7T|1|C2|A|1702, 6T7T|1|C2|C|1703, 6T7T|1|C2|U|1704, 6T7T|1|C2|C|1705, 6T7T|1|C2|C|1706, 6T7T|1|C2|A|1707

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_113 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2344

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6T7T|1|C2|G|1692
6T7T|1|C2|A|1693
6T7T|1|C2|U|1708
6T7T|1|C2|C|1709
6T7T|1|C2|G|1696
6T7T|1|C2|G|1697
6T7T|1|C2|G|1698
6T7T|1|C2|G|1699
6T7T|1|C2|C|1700
6T7T|1|C2|A|1701
6T7T|1|C2|A|1702
6T7T|1|C2|C|1703
6T7T|1|C2|U|1704
6T7T|1|C2|C|1705
6T7T|1|C2|C|1706
6T7T|1|C2|A|1707
6T7T|1|C2|U|1708
*
6T7T|1|C2|C|1709

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-A