3D structure

PDB id
6T7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUGAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T7T_114 not in the Motif Atlas
Geometric match to HL_5NFV_001
Geometric discrepancy: 0.1643
The information below is about HL_5NFV_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.2
Basepair signature
cWW-F
Number of instances in this motif group
7

Unit IDs

6T7T|1|C2|G|1778
6T7T|1|C2|U|1779
6T7T|1|C2|G|1780
6T7T|1|C2|A|1781
6T7T|1|C2|A|1782
6T7T|1|C2|C|1783

Current chains

Chain C2
18S rRNA

Nearby chains

Chain C1
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41-A

Coloring options:


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