HL_6T7T_122

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGGGGGCAACUCCAU

Length

16 nucleotides

Bulged bases

6T7T|1|C2|A|1694, 6T7T|1|C2|G|1695, 6T7T|1|C2|G|1696, 6T7T|1|C2|G|1697, 6T7T|1|C2|G|1698, 6T7T|1|C2|G|1699, 6T7T|1|C2|C|1700, 6T7T|1|C2|A|1701, 6T7T|1|C2|A|1702, 6T7T|1|C2|C|1703, 6T7T|1|C2|U|1704, 6T7T|1|C2|C|1705, 6T7T|1|C2|C|1706, 6T7T|1|C2|A|1707

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T7T|1|C2|A|1693
6T7T|1|C2|A|1694
6T7T|1|C2|G|1695
6T7T|1|C2|G|1696
6T7T|1|C2|G|1697
6T7T|1|C2|G|1698
6T7T|1|C2|G|1699
6T7T|1|C2|C|1700
6T7T|1|C2|A|1701
6T7T|1|C2|A|1702
6T7T|1|C2|C|1703
6T7T|1|C2|U|1704
6T7T|1|C2|C|1705
6T7T|1|C2|C|1706
6T7T|1|C2|A|1707
6T7T|1|C2|U|1708

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-A