3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CAACCG
Length
6 nucleotides
Bulged bases
6T83|1|1b|C|73
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T83_002 not in the Motif Atlas
Homologous match to HL_8C3A_002
Geometric discrepancy: 0.175
The information below is about HL_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22523.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

6T83|1|1b|C|69
6T83|1|1b|A|70
6T83|1|1b|A|71
6T83|1|1b|C|72
6T83|1|1b|C|73
6T83|1|1b|G|74

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain Ly
60S ribosomal protein L13-A
Chain Ny
60S ribosomal protein L15-A
Chain ay
60S ribosomal protein L28
Chain ib
60S ribosomal protein L36-A

Coloring options:


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