HL_6T83_009

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

6T83|1|1b|G|304, 6T83|1|1b|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_009 not in the Motif Atlas

Homologous match to HL_8C3A_009

Geometric discrepancy: 0.1165

The information below is about HL_8C3A_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6T83|1|1b|G|303
6T83|1|1b|G|304
6T83|1|1b|U|305
6T83|1|1b|A|306
6T83|1|1b|A|307
6T83|1|1b|A|308
6T83|1|1b|U|309
6T83|1|1b|U|310
6T83|1|1b|C|311
6T83|1|1b|C|312

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ny

60S ribosomal protein L15-A

Chain ay

60S ribosomal protein L28

Chain ib

60S ribosomal protein L36-A

Chain ob

60S ribosomal protein L42-A