HL_6T83_025

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6T83|1|1b|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_025 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.1551

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T83|1|1b|G|1126
6T83|1|1b|G|1127
6T83|1|1b|U|1128
6T83|1|1b|A|1129
6T83|1|1b|A|1130
6T83|1|1b|G|1131
6T83|1|1b|C|1132

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Iy

60S ribosomal protein L10