HL_6T83_033

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_033 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1452

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T83|1|1b|G|1544
6T83|1|1b|A|1545
6T83|1|1b|A|1546
6T83|1|1b|G|1547
6T83|1|1b|C|1548
6T83|1|1b|U|1549

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ny

60S ribosomal protein L15-A

Chain jb

60S ribosomal protein L37-A