HL_6T83_040

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

6T83|1|1b|C|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_040 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.1248

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6T83|1|1b|C|1792
6T83|1|1b|C|1793
6T83|1|1b|G|1794
6T83|1|1b|U|1795
6T83|1|1b|G|1796

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ay

60S ribosomal protein L2-A

Chain pb

60S ribosomal protein L43-A