HL_6T83_044

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_044 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3817

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6T83|1|1b|G|1952
6T83|1|1b|G|1953
6T83|1|1b|G|1954
6T83|1|1b|U|1955
6T83|1|1b|A|2093
6T83|1|1b|C|2094

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ib

40S ribosomal protein S8-A

Chain Lb

40S ribosomal protein S11-A

Chain Ry

60S ribosomal protein L19-A