HL_6T83_055

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6T83|1|1b|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_055 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1928

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6T83|1|1b|C|2616
6T83|1|1b|U|2617
6T83|1|1b|G|2618
6T83|1|1b|G|2619
6T83|1|1b|G|2620
6T83|1|1b|G|2621
6T83|1|1b|C|2622
6T83|1|1b|G|2623
6T83|1|1b|G|2624

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain 6b

Transfer RNA; tRNA

Chain Iy

60S ribosomal protein L10

Chain by

60S ribosomal protein L29