HL_6T83_071

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

6T83|1|1b|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_071 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1319

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6T83|1|1b|G|3303
6T83|1|1b|U|3304
6T83|1|1b|A|3305
6T83|1|1b|U|3306
6T83|1|1b|A|3307
6T83|1|1b|C|3308
6T83|1|1b|G|3309
6T83|1|1b|A|3310
6T83|1|1b|C|3311

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain By

60S ribosomal protein L3

Chain Py

60S ribosomal protein L17-A