HL_6T83_086

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_086 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.189

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6T83|1|2b|A|520
6T83|1|2b|A|521
6T83|1|2b|U|522
6T83|1|2b|G|523
6T83|1|2b|U|524
6T83|1|2b|A|525
6T83|1|2b|A|526
6T83|1|2b|A|527
6T83|1|2b|U|528
6T83|1|2b|A|529
6T83|1|2b|C|530
6T83|1|2b|C|531
6T83|1|2b|U|532

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Eb

40S ribosomal protein S4-A

Chain Jb

40S ribosomal protein S9-A

Chain Yb

40S ribosomal protein S24-A