3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UGUUCAAAG
Length
9 nucleotides
Bulged bases
6T83|1|2b|G|765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T83_089 not in the Motif Atlas
Homologous match to HL_4V88_203
Geometric discrepancy: 0.2032
The information below is about HL_4V88_203
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47383.2
Basepair signature
cWW-F-F-cWW-F-F
Number of instances in this motif group
11

Unit IDs

6T83|1|2b|U|764
6T83|1|2b|G|765
6T83|1|2b|U|766
6T83|1|2b|U|767
6T83|1|2b|C|768
6T83|1|2b|A|769
6T83|1|2b|A|770
6T83|1|2b|A|771
6T83|1|2b|G|772

Current chains

Chain 2b
18S rRNA

Nearby chains

Chain Eb
40S ribosomal protein S4-A
Chain Jb
40S ribosomal protein S9-A
Chain Yb
40S ribosomal protein S24-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4118 s