HL_6T83_089

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6T83|1|2b|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_089 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2032

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6T83|1|2b|U|764
6T83|1|2b|G|765
6T83|1|2b|U|766
6T83|1|2b|U|767
6T83|1|2b|C|768
6T83|1|2b|A|769
6T83|1|2b|A|770
6T83|1|2b|A|771
6T83|1|2b|G|772

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Eb

40S ribosomal protein S4-A

Chain Jb

40S ribosomal protein S9-A

Chain Yb

40S ribosomal protein S24-A