HL_6T83_090

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_090 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.3137

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6T83|1|2b|C|777
6T83|1|2b|G|778
6T83|1|2b|U|779
6T83|1|2b|A|780
6T83|1|2b|U|781
6T83|1|2b|U|782
6T83|1|2b|G|783

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain Eb

40S ribosomal protein S4-A

Chain Yb

40S ribosomal protein S24-A