3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UUUCAAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T83_103 not in the Motif Atlas
Homologous match to HL_4V88_217
Geometric discrepancy: 0.4449
The information below is about HL_4V88_217
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_67216.9
Basepair signature
cWW-cWW-F-tSH
Number of instances in this motif group
9

Unit IDs

6T83|1|2b|U|1396
6T83|1|2b|U|1397
6T83|1|2b|U|1398
6T83|1|2b|C|1399
6T83|1|2b|A|1400
6T83|1|2b|A|1401
6T83|1|2b|G|1402

Current chains

Chain 2b
18S rRNA

Nearby chains

Chain Rb
40S ribosomal protein S17-B
Chain gb
Guanine nucleotide-binding protein subunit beta-like protein

Coloring options:


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