HL_6T83_151

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_151 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1512

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6T83|1|Aa|A|1462
6T83|1|Aa|U|1463
6T83|1|Aa|G|1464
6T83|1|Aa|A|1465
6T83|1|Aa|G|1466
6T83|1|Aa|A|1467
6T83|1|Aa|A|1468
6T83|1|Aa|C|1469
6T83|1|Aa|U|1470

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L17-A

Chain C

60S ribosomal protein L19-A

Chain O

60S ribosomal protein L31-A