HL_6T83_172

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAGUUUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_172 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3982

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6T83|1|Aa|G|2440
6T83|1|Aa|A|2441
6T83|1|Aa|G|2442
6T83|1|Aa|U|2504
6T83|1|Aa|U|2505
6T83|1|Aa|U|2506
6T83|1|Aa|C|2507

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L36-A

Chain c

40S ribosomal protein S1-A