HL_6T83_180

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUGAAAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_180 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3373

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6T83|1|Aa|A|2743
6T83|1|Aa|U|2744
6T83|1|Aa|G|2745
6T83|1|Aa|A|2746
6T83|1|Aa|A|2747
6T83|1|Aa|A|2748
6T83|1|Aa|G|2749
6T83|1|Aa|U|2750

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L21-A

Chain Ga

60S ribosomal protein L5

Chain Z

60S ribosomal protein L42-A