HL_6T83_188

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6T83|1|Aa|G|3116, 6T83|1|Aa|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_188 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1337

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6T83|1|Aa|C|3110
6T83|1|Aa|U|3111
6T83|1|Aa|G|3112
6T83|1|Aa|A|3113
6T83|1|Aa|A|3114
6T83|1|Aa|C|3115
6T83|1|Aa|G|3116
6T83|1|Aa|C|3117
6T83|1|Aa|C|3118
6T83|1|Aa|U|3119
6T83|1|Aa|C|3120
6T83|1|Aa|U|3121
6T83|1|Aa|A|3122
6T83|1|Aa|A|3123
6T83|1|Aa|G|3124

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ka

60S ribosomal protein L9-A

Chain Qa

60S ribosomal protein L16-A

Chain X

Ubiquitin-60S ribosomal protein L40