HL_6T83_193

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_193 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2326

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6T83|1|Bb|C|36
6T83|1|Bb|G|37
6T83|1|Bb|U|38
6T83|1|Bb|C|39
6T83|1|Bb|C|40
6T83|1|Bb|G|41

Current chains

Chain Bb

5S rRNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain Ga

60S ribosomal protein L5

Chain Ma

60S ribosomal protein L11-A