HL_6T83_195
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6T83|1|Ca|U|81, 6T83|1|Ca|C|84, 6T83|1|Ca|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6T83_195 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.4698
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51921.1
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6T83|1|Ca|U|69
6T83|1|Ca|G|70
6T83|1|Ca|A|71
6T83|1|Ca|A|72
6T83|1|Ca|U|73
6T83|1|Ca|U|74
6T83|1|Ca|G|75
6T83|1|Ca|C|76
6T83|1|Ca|A|77
6T83|1|Ca|G|78
6T83|1|Ca|A|79
6T83|1|Ca|A|80
6T83|1|Ca|U|81
6T83|1|Ca|U|82
6T83|1|Ca|C|83
6T83|1|Ca|C|84
6T83|1|Ca|G|85
6T83|1|Ca|U|86
6T83|1|Ca|G|87
6T83|1|Ca|A|88
6T83|1|Ca|A|89
Current chains
- Chain Ca
- 5.8S rRNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 60S ribosomal protein L26-A
- Chain S
- 60S ribosomal protein L35-A
- Chain W
- 60S ribosomal protein L39
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