HL_6T83_237

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAAUUCAG

Length

9 nucleotides

Bulged bases

6T83|1|2b|A|452, 6T83|1|2b|U|454, 6T83|1|2b|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_237 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3353

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6T83|1|2b|C|449
6T83|1|2b|U|450
6T83|1|2b|A|451
6T83|1|2b|A|452
6T83|1|2b|U|453
6T83|1|2b|U|454
6T83|1|2b|C|455
6T83|1|2b|A|456
6T83|1|2b|G|457

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Eb

40S ribosomal protein S4-A

Chain Yb

40S ribosomal protein S24-A