HL_6T83_240

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

6T83|1|Aa|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_240 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2832

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6T83|1|Aa|A|2896
6T83|1|Aa|A|2897
6T83|1|Aa|G|2898
6T83|1|Aa|C|2899
6T83|1|Aa|A|2900
6T83|1|Aa|G|2901
6T83|1|Aa|A|2902
6T83|1|Aa|A|2903
6T83|1|Aa|U|2904
6T83|1|Aa|U|2905

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ka

60S ribosomal protein L9-A

Chain X

Ubiquitin-60S ribosomal protein L40