HL_6TB3_002

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

6TB3|1|2|U|74, 6TB3|1|2|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_002 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1396

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6TB3|1|2|C|70
6TB3|1|2|A|71
6TB3|1|2|A|72
6TB3|1|2|U|73
6TB3|1|2|U|74
6TB3|1|2|U|75
6TB3|1|2|A|76
6TB3|1|2|U|77
6TB3|1|2|A|78
6TB3|1|2|C|79
6TB3|1|2|A|80
6TB3|1|2|G|81

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain T

40S ribosomal protein S6-A