HL_6TB3_017

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

6TB3|1|2|C|709, 6TB3|1|2|U|711, 6TB3|1|2|G|714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3231

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6TB3|1|2|G|703
6TB3|1|2|C|704
6TB3|1|2|U|705
6TB3|1|2|A|706
6TB3|1|2|A|707
6TB3|1|2|C|708
6TB3|1|2|C|709
6TB3|1|2|U|710
6TB3|1|2|U|711
6TB3|1|2|G|712
6TB3|1|2|A|713
6TB3|1|2|G|714
6TB3|1|2|C|726
6TB3|1|2|U|727
6TB3|1|2|U|728
6TB3|1|2|G|729
6TB3|1|2|G|730
6TB3|1|2|C|731
6TB3|1|2|G|732
6TB3|1|2|A|733
6TB3|1|2|A|734
6TB3|1|2|C|735

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A