HL_6TB3_024

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

6TB3|1|2|U|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_024 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.4006

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97917.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6TB3|1|2|U|1055
6TB3|1|2|U|1056
6TB3|1|2|U|1057
6TB3|1|2|U|1058
6TB3|1|2|U|1059
6TB3|1|2|U|1060
6TB3|1|2|A|1061
6TB3|1|2|A|1062
6TB3|1|2|U|1063
6TB3|1|2|G|1064

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain f

40S ribosomal protein S27-A