HL_6TB3_042

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6TB3|1|BQ|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_042 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0907

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6TB3|1|BQ|U|194
6TB3|1|BQ|U|195
6TB3|1|BQ|G|196
6TB3|1|BQ|G|197
6TB3|1|BQ|A|198
6TB3|1|BQ|A|199
6TB3|1|BQ|C|200
6TB3|1|BQ|A|201

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

60S ribosomal protein L4-A

Chain BG

60S ribosomal protein L32