HL_6TB3_060

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6TB3|1|BQ|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_060 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.1594

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6TB3|1|BQ|C|1023
6TB3|1|BQ|G|1024
6TB3|1|BQ|A|1025
6TB3|1|BQ|A|1026
6TB3|1|BQ|A|1027
6TB3|1|BQ|U|1028
6TB3|1|BQ|G|1029

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L11-B

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A