HL_6TB3_062

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6TB3|1|BQ|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_062 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.0563

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6TB3|1|BQ|G|1126
6TB3|1|BQ|G|1127
6TB3|1|BQ|U|1128
6TB3|1|BQ|A|1129
6TB3|1|BQ|A|1130
6TB3|1|BQ|G|1131
6TB3|1|BQ|C|1132

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein L10