HL_6TB3_074

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6TB3|1|BQ|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_074 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.0824

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6TB3|1|BQ|G|1680
6TB3|1|BQ|U|1681
6TB3|1|BQ|U|1682
6TB3|1|BQ|A|1683
6TB3|1|BQ|U|1684
6TB3|1|BQ|C|1685
6TB3|1|BQ|U|1686
6TB3|1|BQ|U|1687
6TB3|1|BQ|U|1688

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BL

60S ribosomal protein L22-A