HL_6TB3_077

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

6TB3|1|BQ|C|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_077 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.0827

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6TB3|1|BQ|C|1792
6TB3|1|BQ|C|1793
6TB3|1|BQ|G|1794
6TB3|1|BQ|U|1795
6TB3|1|BQ|G|1796

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A