HL_6TB3_085

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_085 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.0868

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6TB3|1|BQ|A|2220
6TB3|1|BQ|G|2221
6TB3|1|BQ|A|2222
6TB3|1|BQ|A|2223
6TB3|1|BQ|A|2224
6TB3|1|BQ|U|2225

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L36-A

Chain AP

60S ribosomal protein L42-A

Chain BT

60S ribosomal protein L1-A