HL_6TB3_088

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6TB3|1|BQ|A|2372, 6TB3|1|BQ|A|2373, 6TB3|1|BQ|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_088 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.043

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6TB3|1|BQ|G|2369
6TB3|1|BQ|G|2370
6TB3|1|BQ|G|2371
6TB3|1|BQ|A|2372
6TB3|1|BQ|A|2373
6TB3|1|BQ|C|2374
6TB3|1|BQ|G|2375
6TB3|1|BQ|G|2376
6TB3|1|BQ|G|2377
6TB3|1|BQ|C|2378

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein L3

Chain BG

60S ribosomal protein L32