HL_6TB3_094

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_094 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1055

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6TB3|1|BQ|A|2673
6TB3|1|BQ|A|2674
6TB3|1|BQ|C|2675
6TB3|1|BQ|A|2676
6TB3|1|BQ|G|2677
6TB3|1|BQ|A|2678
6TB3|1|BQ|A|2679
6TB3|1|BQ|A|2680
6TB3|1|BQ|U|2681

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L11-B