HL_6TB3_105

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6TB3|1|BQ|G|3116, 6TB3|1|BQ|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_105 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0537

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6TB3|1|BQ|C|3110
6TB3|1|BQ|U|3111
6TB3|1|BQ|G|3112
6TB3|1|BQ|A|3113
6TB3|1|BQ|A|3114
6TB3|1|BQ|C|3115
6TB3|1|BQ|G|3116
6TB3|1|BQ|C|3117
6TB3|1|BQ|C|3118
6TB3|1|BQ|U|3119
6TB3|1|BQ|C|3120
6TB3|1|BQ|U|3121
6TB3|1|BQ|A|3122
6TB3|1|BQ|A|3123
6TB3|1|BQ|G|3124

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain AU

60S ribosomal protein L16-A