HL_6TB3_108

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

6TB3|1|BQ|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_108 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.0992

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6TB3|1|BQ|G|3303
6TB3|1|BQ|U|3304
6TB3|1|BQ|A|3305
6TB3|1|BQ|U|3306
6TB3|1|BQ|A|3307
6TB3|1|BQ|C|3308
6TB3|1|BQ|G|3309
6TB3|1|BQ|A|3310
6TB3|1|BQ|C|3311

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A