HL_6TB3_114

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6TB3|1|BS|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_114 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1357

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6TB3|1|BS|G|124
6TB3|1|BS|U|125
6TB3|1|BS|A|126
6TB3|1|BS|U|127
6TB3|1|BS|U|128
6TB3|1|BS|C|129

Current chains

Chain BS

5.8S rRNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain BV

60S ribosomal protein L41-A