HL_6TB3_118
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TB3_118 not in the Motif Atlas
- Geometric match to HL_3IGI_005
- Geometric discrepancy: 0.293
- The information below is about HL_3IGI_005
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
6TB3|1|2|A|829
6TB3|1|2|U|830
6TB3|1|2|U|831
6TB3|1|2|U|832
6TB3|1|2|U|833
6TB3|1|2|G|834
6TB3|1|2|U|835
6TB3|1|2|U|836
6TB3|1|2|G|837
6TB3|1|2|G|838
6TB3|1|2|U|839
6TB3|1|2|U|840
6TB3|1|2|U|841
6TB3|1|2|C|842
6TB3|1|2|U|843
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain T
- 40S ribosomal protein S6-A
- Chain X
- 40S ribosomal protein S11-A
Coloring options: