HL_6TBV_013

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6TBV|1|16S1|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_013 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1171

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

6TBV|1|16S1|C|419
6TBV|1|16S1|U|420
6TBV|1|16S1|U|421
6TBV|1|16S1|C|422
6TBV|1|16S1|G|423
6TBV|1|16S1|G|424

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S031

30S ribosomal protein S3

Chain S041

30S ribosomal protein S4