HL_6TBV_015

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_015 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2355

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6TBV|1|16S1|G|521
6TBV|1|16S1|C|522
6TBV|1|16S1|A|523
6TBV|1|16S1|G|524
6TBV|1|16S1|C|525
6TBV|1|16S1|C|526
6TBV|1|16S1|G7M|527
6TBV|1|16S1|C|528

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S121

30S ribosomal protein S12