HL_6TBV_029

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

6TBV|1|16S1|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_029 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2766

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6TBV|1|16S1|U|1165
6TBV|1|16S1|G|1166
6TBV|1|16S1|A|1167
6TBV|1|16S1|U|1168
6TBV|1|16S1|A|1169
6TBV|1|16S1|A|1170
6TBV|1|16S1|A|1171

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S021

30S ribosomal protein S2