3D structure

PDB id
6TBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
G(PSU)GCUAACGU
Length
10 nucleotides
Bulged bases
6TBV|1|23S1|U|958, 6TBV|1|23S1|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6TBV_060 not in the Motif Atlas
Homologous match to HL_5J7L_159
Geometric discrepancy: 0.0673
The information below is about HL_5J7L_159
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6TBV|1|23S1|G|954
6TBV|1|23S1|PSU|955
6TBV|1|23S1|G|956
6TBV|1|23S1|C|957
6TBV|1|23S1|U|958
6TBV|1|23S1|A|959
6TBV|1|23S1|A|960
6TBV|1|23S1|C|961
6TBV|1|23S1|G|962
6TBV|1|23S1|U|963

Current chains

Chain 23S1
23S rRNA

Nearby chains

Chain 05S1
5S ribosomal RNA; 5S rRNA
Chain L161
50S ribosomal protein L16

Coloring options:


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