HL_6TBV_062

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6TBV|1|23S1|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_062 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2212

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|C|1064
6TBV|1|23S1|U|1065
6TBV|1|23S1|U|1066
6TBV|1|23S1|A|1067
6TBV|1|23S1|G|1068
6TBV|1|23S1|A|1069
6TBV|1|23S1|A|1070
6TBV|1|23S1|G|1071
6TBV|1|23S1|C|1072
6TBV|1|23S1|A|1073
6TBV|1|23S1|G|1074

Current chains

Chain 23S1

23S rRNA

Nearby chains